PUBLICATIONS

İLHAN EMRE, EREN ABDİL HAKAN, ERDOĞAN CAHİT, ERAYMAN MUSTAFA (2014). Developing of EST – SSR Markers Derived from Medicago truncatula EST Database. MKU Ziraat Fakültesi Dergisi, 19(1), 19-24. (In Turkish)

EREN ABDİL HAKAN, İLHAN EMRE, ERDOĞAN CAHİT, ERAYMAN MUSTAFA (2014). MicroRNAs and Its Functions in Stress Conditions. MKU Ziraat Fakültesi Dergisi, 19(1), 25-35. (In Turkish)

İLHAN EMRE, EREN ABDİL HAKAN, ERAYMAN MUSTAFA (2013). Virus Induced Gene Silencing in Cold Season Cereals: The Use of BSMV Vector. Atatürk Univ., J. of the Agricultural Faculty, 44(1), 91-97. (In Turkish)

ERAYMAN MUSTAFA, İLHAN EMRE, GÜZEL YELDA, EREN ABDİL HAKAN (2014). Transferability of SSR markers from distantly related legumes to Glycyrrhiza species. TURKISH JOURNAL OF AGRICULTURE AND FORESTRY, 38(1), 32-38., Doi: 10.3906/tar-1303-47.

ÖZÇUBUKÇU SERHAT, ERGÜN NURAY, İLHAN EMRE (2014). Waterlogging and nitric oxide induce gene expression and increase antioxidant enzyme activity in wheat Triticum aestivum L. Acta Biologica Hungarica, 65(1), 47-60., Doi: 10.1556/ABiol.65.2014.1.5

AVCI SÜLEYMAN, İLHAN EMRE, ERAYMAN MUSTAFA, SANCAK CENGİZ (2014). Analysis of Onobrychis Genetic Diversity Using SSR Markers from Related Legume Species. The Journal of Plant and Animal Sciences, 24(2), 556-566.

İNAL BEHÇET, TÜRKTAŞ MİNE, EREN ABDİL HAKAN, İLHAN EMRE, OKAY SEZER, ATAK MEHMET, ERAYMAN MUSTAFA, ÜNVER TURGAY (2014). Genome wide fungal stress responsive miRNA expression in wheat. Planta, 240(6), 1287-1298., Doi: 10.1007/s00425-014-2153-8.

EREN ABDİL HAKAN, PEKMEZCİ M YUSUF, OKAY SEZER, TÜRKTAŞ MİNE, İNAL BEHÇET, İLHAN EMRE, ATAK MEHMET, ERAYMAN MUSTAFA, ÜNVER TURGAY (2015). Hexaploid wheat Triticum aestivum root miRNome analysis in response to salt stress. Annals of Applied Biology, 167(2), 208-216., Doi: 10.1111/aab.12219.

ERAYMAN MUSTAFA, TÜRKTAŞ MİNE, AKDOĞAN GÜRAY, GURKOK TUGBA, İNAL BEHÇET, İSHAKOĞLU EMRE, İLHAN EMRE, ÜNVER TURGAY (2015). Transcriptome analysis of wheat inoculated with Fusarium graminearum. Frontiers in Plant Science, 6, 1-17., Doi: 10.3389/fpls.2015.00867.

ATAK MEHMET, İLHAN EMRE, ERAYMAN MUSTAFA, DİLBİRLİĞİ MUHARREM, EREN ABDİL HAKAN, ARSLAN MEHMET, ÇELİKTAŞ NAFİZ (2015). Identification of SSR and EST Markers Associated With Waterlogging Tolerance in Bread Wheat. Fresenius Environmental Bulletin, 24(11), 3649-3656.

ERAYMAN MUSTAFA, İLHAN EMRE, ABDİL HAKAN EREN, GÜNGÖR HÜSEYİN, AKGÖL BATUHAN (2016). Diversity analysis of genetic agronomic and quality characteristics of bread wheat Triticum aestivum L cultivars grown in Turkey. TURKISH JOURNAL OF AGRICULTURE AND FORESTRY, 40(1), 83-94., Doi: 10.3906/tar-1502-135.

EREN ABDİL HAKAN, İLHAN EMRE, İNAL BEHCET (2016). Analysis of miRNA in plants by Next Generation Sequencing Technology. YYU J AGR SCI, 26(3), 448-454. (In Turkish)

EREN ABDİL HAKAN, İLHAN EMRE, İNAL BEHCET (2016). miR482 and Its Isoforms in Plants. Türkiye Tarımsal Araştırmalar Dergisi, 3(2), 184-191., Doi: 10.19159/tutad.48747 (In Turkish)

ATAY VOLKAN, KARAHAN FARUK, ÖZTÜRK MUNİR, HAKEEM KHALID REHMAN, İLHAN EMRE, ERAYMAN MUSTAFA (2016). Molecular and ecological investigations on the wild populations of Glycyrrhiza L taxa distributed in the East Mediterranean Area of Turkey. Journal of Plant Research, 129(6), 1021-1032., Doi: 10.1007/s10265-016-0864-6.

BÜYÜK İLKER, İNAL BEHCET, İLHAN EMRE, TANRISEVEN MEHMET, ARAS EMİNE SÜMER, ERAYMAN MUSTAFA (2016). Genome wide identification of salinity responsive HSP70s in common bean. Molecular Biology Reports, 43(11), 1251-1266., Doi: 10.1007/s11033-016-4057-0

İLHAN EMRE, ÖZGÜR SEVDA, SAVAŞ TUNA GÜLSEMİN, EREN ABDİL HAKAN, KARAHAN FARUK, TUNA METİN, ERAYMAN MUSTAFA (2017). Nuclear DNA Content Variation Among Glycyrrhiza Taxon’s Collected From East Mediterranean. Fresenius Environmental Bulletin, 26(5), 3251-3256.

ÜNVER TURGAY, Zhangyan Wu, Lieven Sterck, TÜRKTAŞ MİNE, Lohaus Rolf, Li Zhen, Yang Ming, He Lijuan, Deng Tianquan, Escalante Francisco Javier, Llorens Carlos, Roig Francisco J, Parmaksiz Iskender, Dündar Ekrem, Xie Fuliang, Zhang Baohong, Ipek Arif, ERAYMAN MUSTAFA, İLHAN EMRE, Badad Oussama, Ghazal Hassan, Lightfoot David A, Kasarla Pavan, Colantonio Vincent, Tombuloglu Huseyin, Hernandez Pilar, Mete Nurengin, Cetin Oznur, Montagu Marc Van, Yang Huanming, Gao Qiang, Dorado Gabriel, Van de Peer Yves (2017). Genome of wild olive and the evolution of oil biosynthesis. Proceedings of the National Academy of Sciences, 114(44), 9413-9422., Doi: 10.1073/pnas.1708621114

İNAL BEHCET, BÜYÜK İLKER, İLHAN EMRE, ARAS EMİNE SÜMER (2017). Genome-wide analysis of Phaseolus vulgaris C2C2-YABBY transcription factors under salt stress conditions. 3Biotech, 7, 302, Doi: 10.1007/s13205-017-0933-0.

İLHAN EMRE, BÜYÜK İLKER, İNAL BEHÇET (2018). Transcriptome – Scale characterization of salt responsive bean TCP transcription factors. GENE, 642, 64-73., Doi: 10.1016/j.gene.2017.11.021

İLHAN EMRE (2018). Genome-Wide Analysis of Eucalyptus grandis YABBY Transcription Factors. Türkiye Tarımsal Araştırmalar Dergisi, 5(2), 158-166., Doi: 10.19159/tutad.408654 (In Turkish)

İLHAN EMRE (2018). Genome-Wide Characterization and Analysis of SBP Transcription Factor Family in Common Bean (Phaseolus vulgaris L.). APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH, 16(5), 5467-5480., Doi: 10.15666/aeer/1605_54675480.

BÜYÜK İLKER, İNAL BEHCET, İLHAN EMRE, ARAS EMİNE SÜMER (2019). Common Bean (Phaseolus vulgaris L.) DOF Transcription Factors Differentially Expressed under Salt Stress. Commun.Fac.Sci.Univ.Ank.Series C, 28(1), 43-66., Doi: 10.1501/commuc_0000000229.

BÜYÜK İLKER, İLHAN EMRE, ŞENER DİLARA, ÖZSOY ATA UMUT, ARAS EMİNE SÜMER (2019). Genome-wide identification of CAMTA gene family members in Phaseolus vulgaris L. and their expression profiling during salt stress. Molecular Biology Reports, 46(3), 2721-2732., Doi: 10.1007/s11033-019-04716-8.

HOSSEINPOUR ARASH, KARAHAN FARUK, İLHAN EMRE, İLÇİM AHMET, HALİLOĞLU KAMİL (2019). Genetic structure and diversity of Adonis L. (Ranunculaceae) populations collected from Turkey by inter-primer binding site (iPBS) retrotransposon markers. TURKISH JOURNAL OF BOTANY, 43(5), 585-596., Doi: 10.3906/bot-1810-1.

İNAL BEHCET, İLHAN EMRE, BÜYÜK İLKER, ALTINTAŞ SERDAR (2020). Transcriptome wide characterization of water deficit responsive grape mTERF transcription. Journal of Plant Biochemistry and Biotechnology, 29(1), 102-113., Doi: 10.1007/s13562-019-00520-4

KASAPOĞLU AYŞE GÜL, İLHAN EMRE, KIZILKAYA DAMLA, HOSSEINPOUR ARASH, HALİLOĞLU KAMİL (2020). Genome-Wide Analysis of BES1 Transcription Factor Family in Sorghum [Sorghum bicolor (L.) Moench] Genome. Turkish Journal of Agricultural Research, 7(1), 85-95., Doi: 10.19159/tutad.671605 (In Turkish)

KIZILKAYA DAMLA, KASAPOĞLU AYŞE GÜL, HOSSEINPOUR ARASH, HALİLOĞLU KAMİL, MUSLU SELMAN, İLHAN EMRE (2020). Genome wide analysis of Sorghum bicolor L. CAMTA Transcription Factors. Atatürk Univ., J. of the Agricultural Faculty, 51(3), 267-278., Doi: 10.17097/ataunizfd.690138 (In Turkish)

HOSSEINPOUR ARASH, İLHAN EMRE, ÖZKAN GÜLLER, ÖZTÜRK HALİL İBRAHİM, HALİLOĞLU KAMİL, CİNİSLİ KAĞAN TOLGA (2021). Plant Growth-Promoting Bacteria (PGPBs) and Copper (II) Oxide (CuO) Nanoparticle Ameliorates DNA Damage and DNA Methylation in Wheat (Triticum aestivum L.) exposed to NaCl stress. Journal of Plant Biochemistry and Biotechnology, 31(4): 751–764. https://doi.org/10.1007/s13562-021-00713-w

SOYDAŞ VEYSEL, AYDIN MURAT, ELKOCA ERDAL, İLHAN EMRE (2021). A Preliminary Study on the Characterization of Common Bean Landraces in Gümüşhane in Terms of Morphological and Agricultural Characteristics. ANADOLU, J. of AARI, 31(2), 143-160., Doi: 10.18615/anadolu.1029881

BÜYÜK İLKER, OKAY AYBÜKE, GORSKA MARTA, İLHAN EMRE, ARAS EMİNE SÜMER (2021). Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. TURKISH JOURNAL OF BOTANY, 45, 655-670., Doi: 10.3906/bot-2101-13

AYGÖREN AHMED SİDAR, MUSLU SELMAN, ISIYEL MURAT, ÖNER BURAK MUHAMMED, KASAPOĞLU AYŞE GÜL, AYDINYURT RECEP, YAPRAK ESRA, UÇAR SÜMEYRA, İLHAN EMRE, AYDIN MURAT (2022). Genome-Wide Analysis and Characterization of the VPE Gene Family under Salt and Drought Stress in Common Bean Genotypes. European Journal of Science and Technology, Doi: 10.31590/ejosat.1083440 (In Turkish)

KASAPOĞLU AYŞE GÜL, AYGÖREN AHMED SİDAR, MUSLU SELMAN, ÖNER BURAK MUHAMMED, ISIYEL MURAT, YAPRAK ESRA, UÇAR SÜMEYRA, AYDINYURT RECEP, UZUN BÜŞRA, İLHAN EMRE, AYDIN MURAT (2022). Genome-wide characterization and identification of PvTLP genes. European Journal of Science and Technology, 34, 676-684. (In Turkish)

ISIYEL MURAT, ÖNER BURAK MUHAMMED, YAPRAK ESRA, UÇAR SÜMEYRA, KASAPOĞLU AYŞE GÜL, AYGÖREN AHMED SİDAR, MUSLU SELMAN, AYDINYURT RECEP, İLHAN EMRE, AYDIN MURAT (2022). Genome-wide characterization of the phospholipase D gene family under salt and drought stress in the bean plant. European Journal of Science and Technology, 34, 585-593., Doi: 10.31590/ejosat (In Turkish)

GÜNGÖR HÜSEYİN, İLHAN EMRE, KASAPOĞLU AYŞE GÜL, FİLİZ ERTUĞRUL, HOSSEINPOUR ARASH, VALCHEV DRAGOMIR, VALCHEVA DARINA, DUMLUPINAR ZİYA, HALİLOĞLU KAMİL (2022). Genetic Diversity and Population Structure of Barley Cultivars Released in Turkey and Bulgaria using iPBS-retrotransposon and SCoT markers. Journal of Agricultural Sciences-Tarim Bilimleri Dergisi, 28(2), 239-250., Doi: 10.15832/ankutbd.886221

ÖNER BURAK MUHAMMED, İLHAN EMRE, KASAPOĞLU AYŞE GÜL, MUSLU SELMAN, AYGÖREN AHMED SİDAR, UÇAR SÜMEYRA, YAPRAK ESRA, ISIYEL MURAT, AYDINYURT RECEP, AYDIN MURAT (2022). Genome Wide Analysis and Characterization of NPR-like Gene Family of Phaseolus vulgaris L.. Natural Products and Biotechnology, 2(1), 23-41.

KARAHAN FARUK, İLÇİM AHMET, TÜRKOĞLU ARAS, İLHAN EMRE, HALİLOĞLU KAMİL (2022). Phylogenetic relationship among taxa in the genus Adonis L. collected from Türkiye based on nrDNA internal transcribed spacer (ITS) markers. Molecular Biology Reports, 49, 7815-7826., Doi: 10.1007/s11033-022-07607-7 (Yayın No: 7710964)

AYGÖREN AHMED SİDAR, AYDINYURT RECEP, UÇAR SÜMEYRA, KASAPOĞLU AYŞE GÜL, YAPRAK ESRA, ÖNER BURAK MUHAMMED, MUSLU SELMAN, ISIYEL MURAT, İLHAN EMRE, AYDIN MURAT, TURAN MURAT (2022). Genome-Wide Analysis and Characterization of the PIF Gene Family Under Salt and Drought Stress in Common Beans (Phaseolus vulgaris L.). Turkish Journal of Agricultural Research

AYG.REN AHMED SIDAR, GUNES EBRU, MUSLU SELMAN, KASAPOGLU AYSE GUL, YIGIDER ESMA, AYDIN MURAT, BUYUK ILKER, ILHAN EMRE (2023). Genome-Wide Analysis and Characterization of SABATH Gene Family in Phaseolus vulgaris Genotypes Subject to Melatonin under Drought and Salinity Stresses. Springer Science and Business Media LLC, 41(2), 242-259., Doi: 10.1007/s11105-022-01363-5

RAKHIMZHANOVA AKGUL, KASAPOGLU AYSE GUL, SAPAKOVA AIGUL, ILHAN EMRE, ZHARMUKHAMETOVA RAUSHAN, TURAN MURAT, ZEKENOVA LAILA, MUSLU SELMAN, KAZHYGELDIYEVA LAURA, AYDIN MURAT, CILTAS ABDULKADIR (2023). Expression analysis and characterization of the CPP gene family of Melatonin-treated common bean cultivars under different abiotic stresses. South African Journal of Botany, 160, 282-294., Doi: 10.1016/j.sajb.2023.07.013

SAGBAS HALIL IBRAHIM, ERCISLI SEZAI, AYDIN MURAT, ILHAN EMRE, KASAPOGLU AYSE GUL, MUSLU SELMAN, POLAT YAKUP (2023). Evaluation of Genetic Diversity by Using iPBS-SCoT Marker Methods in Native Hawthorn Genetic Resources and Species Identification Using DNA Barcoding Method: Genetic Diversity by iPBS-SCoT Marker in Native Hawthorn. Cellular and Molecular Biology, 69(10), 43-55., Doi: 10.14715/cmb/2023.69.10.6

MUSLU SELMAN, KASAPOGLU AYSE GUL, GUNES EBRU, AYG.REN AHMED SIDAR, YIGIDER ESMA, ILHAN EMRE, AYDIN MURAT (2023). Genome-Wide Analysis of Glutathione S-Transferase Gene Family in P. vulgaris Under Drought and Salinity Stress. Plant Molecular Biology Reporter, Doi: 10.1007/s11105-023-01400-x

ILHAN EMRE, KASAPOGLU AYSE GUL, TURKOGLU ARAS, AYG.REN AHMED SIDAR, MUSLU SELMAN, AYDIN MURAT, ALDAIF MUHAMMED, HALILOGLU KAMIL (2023). Evaluation of Sodium Azide as a Chemical Mutagen in Developing Cold-Tolerant Quinoa (Chenopodium quinoa Willd.) Lines. Iranian Journal of Science, 47, 663-671., Doi: 10.1007/s40995-023-01452-4

BOLOURI PARISA, HALILOGLU KAMIL, MOHAMMADI SEYYED ABOLGHASEN, TURKOGLU ARAS, ILHAN EMRE, NIEDBALA GNIEWKO, SZULC PIOTR, NIAZIAN MOHSEN (2023). Identification of Novel QTLs Associated with Frost Tolerance in Winter Wheat (Triticum aestivum L.). Plants, 12(8), 1641, Doi: 10.3390/plants12081641

ILHAN EMRE, KASAPOGLU AYSE GÜL, MUSLU SELMAN, AYGÖREN AHMED SIDAR, AYDIN MURAT (2023). Genome – wide Analysis and Characterization of Eucalyptus grandis TCP Transcription Factors. Journal of Agricultural Sciences-Tarim Bilimleri Dergisi, 29(2), 413-426., Doi: 10.15832/ankutbd.1104949

KASAPOGLU AYSE GUL, ILHAN EMRE, AYDIN MURAT, YIGIDER ESMA, INAL BEHCET, BUYUK ILKER, TASPINAR MAHMUT SINAN, CILTAS ABDULKADIR, AGAR GULERAY (2023). Characterization of Two-Component System Gene (TCS) in Melatonin-treated common bean under salt and drought stress. Physiology and Molecular Biology of Plants

ILHAN EMRE, KASAPOGLU AYSE GUL, MUSLU SELMAN, AYG.REN AHMED SIDAR, AYDIN MURAT (2023). Genome – wide Analysis and Characterization of Eucalyptus grandis TCP Transcription Factors. Journal of Agricultural Sciences-Tarim Bilimleri Dergisi, 29(2), 413-426., Doi: 10.15832/ankutbd.1104949

İLHAN EMRE, KASAPOĞLU AYŞE GÜL, MUSLU SELMAN, AYGÖREN AHMED SİDAR, AYDIN MURAT (2023). Genome – wide Analysis and Characterization of Eucalyptus grandis TCP Transcription Factors. Journal of Agricultural Sciences-Tarim Bilimleri Dergisi, 29(2), 413-426., D 10.15832/ankutbd.1104949

İLHAN EMRE, KASAPOĞLU AYŞE GÜL, TÜRKOĞLU ARAS, AYGÖREN AHMED SİDAR, MUSLU SELMAN, AYDIN MURAT, ALDAİF MUHAMMED, HALİLOĞLU KAMİL (2023). Evaluation of Sodium Azide as a Chemical Mutagen in Developing Cold-Tolerant Quinoa (Chenopodium quinoa Willd.) Lines. Iranian Journal of Science, 47, 663-671., Doi: 10.1007/s40995-023-01452-4

BOLOURI PARISA, HALİLOĞLU KAMİL, MOHAMMADI SEYYED ABOLGHASEN, TÜRKOĞLU ARAS, İLHAN EMRE, NIEDBALA GNIEWKO, SZULC PIOTR, NIAZIAN MOHSEN (2023). Identification of Novel QTLs Associated with Frost Tolerance in Winter Wheat (Triticum aestivum L.). Plants, 12(8), 1641, Doi: 10.3390/plants12081641

AYGÖREN AHMED SİDAR, GÜNEŞ EBRU, MUSLU SELMAN, KASAPOĞLU AYŞE GÜL, YİĞİDER ESMA, AYDIN MURAT, BÜYÜK İLKER, İLHAN EMRE (2023). Genome-Wide Analysis and Characterization of SABATH Gene Family in Phaseolus vulgaris Genotypes Subject to Melatonin under Drought and Salinity Stresses. Plant Molecular Biology Reporter, 41(2), 242-259., Doi: 10.1007/s11105-02201363-5

SAĞBAŞ HALİL İBRAHİM, ERCİŞLİ SEZAİ, AYDIN MURAT, İLHAN EMRE, AYDINYURT RECEP, KASAPOĞLU AYŞE GÜL, MUSLU SELMAN, POLAT YAKUP (2023). Evaluation of Genetic Diversity by Using iPBS-SCoT Marker Methods in Native Hawthorn Genetic Resources and Species Identification Using DNA Barcoding Method: Genetic Diversity by iPBS-SCoT Marker in Native Hawthorn. Cellular and Molecular Biology, 69(10), 43-55., Doi: 10.14715/cmb/2023.69.10.6

RAKHIMZHANOVA AKGUL, KASAPOĞLU AYŞE GÜL, SAPAKOVA AIGUL, İLHAN ZHARMUKHAMETOVA RAUSHAN, TURAN MURAT, ZEKENOVA LAILA, MUSLU SELM KAZHYGELDIYEVA LAURA, AYDIN MURAT, ÇİLTAŞ ABDULKADİR (2023). Expression analysis and characterization of the CPP gene family of Melatonin-treated common bean cultivars under different abiotic stresses. South African Journal of Botany, 160, 282-294 10.1016/j.sajb.2023.07.013

YILMAZ CEREN, YÜCE MERVE, AYGÖREN AHMED SİDAR, KASAPOĞLU AYŞE GÜL, MUSLU SELMAN, TURAN MURAT, İLHAN EMRE, AYDIN MURAT, YILDIRIM ERTAN (2023). Genome-wide Analysis and Functional Identification of KCS Gene Family under Drought and Salt Stresses in Phaseolus vulgaris L. Journal of Agricultural Production, 4(2), 138-151., Doi: 10.56430/japro.137163

KASAPOĞLU AYŞE GÜL, İLHAN EMRE, AYDIN MURAT, YİĞİDER ESMA, İNAL BEHCET, BÜYÜK İLKER, TAŞPINAR MAHMUT SİNAN, ÇİLTAŞ ABDULKADİR, AĞAR GÜLERAY (2023). Characterization of Two-Component System gene (TCS) in melatonin-treated common bean under salt and drought stress. Physiology and Molecular Biology of Plants, 29(11), 1733-1754., Doi: 10.1007/s12298-023-01406

YÜCE MERVE, YILDIRIM ERTAN, EKİNCİ MELEK, TURAN METİN, İLHAN EMRE, AYDIN MURAT, AĞAR GÜLERAY, UÇAR SÜMEYRA (2024). N-acetyl-cysteine mitigates arsenic stress in lettuce: Molecular, biochemical, and physiological perspective. Plant Physiology and Biochemistry, 10.1016/j.plaphy.2024.108390

UÇAR SÜMEYRA,ALIM ŞEYMA,KASAPOĞLU AYŞE GÜL,YİĞİDER ESMA,İLHAN EMRE,POLAT AYSUN,TURAN MURAT,DİKBAŞ NESLİHAN,AYDIN MURAT (2024). Genome-Wide Analysis and Characterization of FBA (Fructose 1,6-bisphosphate aldolase) Gene Family of Phaseolus vulgaris L. Journal of Agricultural Production, 5(1), 30-40., Doi: 10.56430/japro.143

MUSLU SELMAN, KASAPOĞLU AYŞE GÜL, GÜNEŞ EBRU, AYGÖREN AHMED SİDAR, YİĞİDER ESMA, İLHAN EMRE, AYDIN MURAT (2024). Genome-Wide Analysis of Glutathione S-Transferase Gene Family in P. vulgaris Under Drought and Salinity Stress. Plant Molecular Biology Reporter, 42(1), 57-76., Doi: 10.1007/s11105-023-01400-x

KASAPOĞLU AYŞE GÜL,MUSLU SELMAN,AYGÖREN AHMED SİDAR,ÖNER BURAK MUHAMMED,GÜNEŞ EBRU,İLHAN EMRE,YİĞİDER ESMA,AYDIN MURAT (2024). Genome-wide characterization of the GPAT gene family in bean (Phaseolus vulgaris L.) and expression analysis under abiotic stress and melatonin. Genetic Resources and Crop Evolution, 71(8), 4549-4569., Doi: 10.1007/s10722-02401899-3

YÜCE MERVE, EKİNCİ MELEK, TURAN METİN, AĞAR GÜLERAY, AYDIN MURAT, İLHAN EMRE, YILDIRIM ERTAN (2024). Chrysin mitigates copper stress by regulating antioxidant enzymes activity, plant nutrient and phytohormones content in pepper. Scientia Horticulturae, 328, 112887, Doi: 10.1016/j.scienta.2024.112887

BÜYÜK İLKER, OKAY AYBÜKE, İLHAN EMRE, AYTAÇ SELİM, AKDENİZ SANEM, ARAS EMİNE SÜMER (2024). Omics data-based identification of HSP70 gene family in C. sativa under drought stress. South African Journal of Botany, 167, 94-107., Doi: 10.1016/j.sajb.2024.02.

EKİNCİ MELEK,SHAMS MOSTAFAKAMAL,TURAN METİN,UÇAR SÜMEYRA,YAPRAK ESRA,ARSLAN YÜKSEL ESRA,AYDIN MURAT,İLHAN EMRE,AĞAR GÜLERAY,ERCİŞLİ SEZAİ,YILDIRIM ERTAN (2024). Chitosan mitigated the adverse effect of Cd by regulating antioxidant activities, hormones, and organic acids contents in pepper (Capsicum annum L.). Heliyon, 10(17 10.1016/j.heliyon.2024.e36867

UÇAR SÜMEYRA,YAPRAK ESRA,YİĞİDER ESMA,KASAPOĞLU AYŞE GÜL,ÖNER B MUHAMMED,İLHAN EMRE,ÇİLTAŞ ABDULKADİR,YILDIRIM ERTAN,AYDIN MURAT (2024). Genomewide analysis of miR172-mediated response to heavy metal stress in chickpea (Cicer arietinum L.): physiological, biochemical, and molecular insights. BMC Plant Biology, 24(1063), 1-25., Doi: 10.1186/s12870-024-05786-y

KIZILKAYA DAMLA,İLHAN EMRE,AYDIN MURAT,KASAPOĞLU AYŞE GÜL,YİĞİDER ESMA,TÜRKOĞLU ARAS,GÜNEŞ ADEM,HALİLOĞLU KAMİL (2024). Investigation of biochemical and molecular changes in wheat genotypes under alkaline salt stress. Acta Physiologiae Plantarum, 46(12), 115, Doi: 10.1007/s11738-024-03742-9

YILDIRIM ERTAN,EKİNCİ MELEK,TURAN METİN,AYDIN MURAT,YÜCE MERVE,AĞAR GÜLERAY,ÖRS CIRIK SELDA,İLHAN EMRE,ÇİLTAŞ ABDULKADİR (2024). Chrysin alleviates salt stress in tomato by physiological, biochemical, and genetic mechanisms. Rhizosphere, 32, 100979, D 10.1016/j.rhisph.2024.100979

İLHAN EMRE,GÜZEY YUSUF ZİYA (2025). Genome-Wide in silico Analysis and Identification of Bos taurus SOX Gene Family. Black Sea Journal of Agriculture, 8(4), 563-569 10.47115/bsagriculture.1719387

BOZKURT YAREN, YÜCE MERVE, YAPRAK ESRA, KASAPOĞLU AYŞE GÜL, İLHAN EMRE, TURAN MURAT, AYDIN MURAT, YILDIRIM ERTAN (2024). Genome-Wide Analysis and Characterization of the AHL Gene Family in Common Beans (Phaseolus vulgaris L.). Erzincan Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 17(1), 147-163., Doi: 10.18185/erzifbed.1375233

AYDINYURT RECEP,YAĞCİ ERGÜL SEMRA,YAPRAK ESRA,KASAPOĞLU AYŞE GÜL,MUSL SELMAN,UÇAR SÜMEYRA,AYGÖREN AHMED SİDAR,YİĞİDER ESMA,ÖNER BURAK MUHAMMED,İLHAN EMRE,AYDIN MURAT (2025). Epigenetic Evaluation of Melatonin Application in Bean (Phaseolus vulgaris L.) Genotypes Under Drought and Salt Stress Conditions. Plant Molecular Biology Reporter, 43, 1144-1162., Doi: 10.1007/s11105-025-01527

YILDIRIM ERTAN,TURAN METİN,EKİNCİ MELEK,ERCİŞLİ SEZAİ,ÖZTÜRK HALİL İBRAHİM,AYDIN MURAT,İLHAN EMRE,VICAS VIONA IONAS,IANCU CARMEN VIOLETA,GITEA DANIELA,DOMUTA CRISTIAN GABRIEL,BORZA IOANA MARIA,GITEA MANUEL ALEXANDRU (2025). Composition of Specific Sugars, and Organic Acids in Wild Edible Aromatic and Medicinal Vegetables Horticulturae, 11(2), 145, Doi: 10.3390/horticulturae1102

UÇAR SÜMEYRA,ALDAİF MUHAMMED,YAPRAK ESRA,YİĞİDER ESMA,AYDIN MURAT,İLHAN EMRE,ÇİLTAŞ ABDULKADİR,YILDIRIM ERTAN (2025). Optimizing In Vitro Regeneration of Wheat via Somatic Embryogenesis Using Endosperm-Supported Mature Embryos. Phyton-International Journal of Experimental Botany, 0, Doi: 10.32604/phyton.2025.06838

İNAL BEHCET,MUSLU SELMAN,YİĞİDER ESMA,KASAPOĞLU AYŞE GÜL,İLHAN EMRE,ÇİLTAŞ ABDULKADİR,YILDIRIM ERTAN,AYDIN MURAT (2025). In silico analysis of Phaseolus vulgaris L. metalloprotease FtsH gene: characterization and expression in drought and salt stress. Genetic Resources and Crop Evolution, 72(1), 1065-1088., Doi: 10.1007/s10722-024-02031-

ISIYEL MURAT,İLHAN EMRE,AYDIN MURAT,KASAPOĞLU AYŞE GÜL,YİĞİDER ESMA,MUSLU SELMAN,AYGÖREN AHMED SİDAR,YILDIRIM ERTAN (2025). Identification and characterization of Phaseolus vulgaris CHS genes in response to salt and drought stress. Genetic Resources and Crop Evolution, 72, 271-293., Doi: 10.1007/s10722-024-01980-x

DERELLİ TÜFEKÇİ EBRU,TELLİOĞLU BAYRAM,AYGÖREN AHMED SİDAR,YAPRAK ESRA,İLHAN EMRE (2025). Genome-wide characterization of ascorbate peroxidase (APX) gene family in Phaseolus vulgaris L. of response to multiple abiotic stresses. South African Journal of Botany, 177, 429-444., Doi: 10.1016/j.sajb.2024.12.030

BUTTANRI AZİZE,KASAPOĞLU AYŞE GÜL,ÖNER BURAK MUHAMMED,MUSLU SELMAN,AYGÖREN AHMED SİDAR,İLHAN EMRE,YILDIRIM ERTAN,AYDIN MURAT (2025). Predicting the role of β-GAL genes in bean under abiotic stress and genome-wide characterization of β-GAL gene family members. Protoplasma, 262, 365-383., Doi: 10.1007/s00709-024-0

ALDAİF MUHAMMED,UÇAR SÜMEYRA,YİĞİDER ESMA,AYDIN MURAT,KASAPOĞLU AYŞE GÜL,İLHAN EMRE (2025). Micropropagation and genetic fidelity of Rheum ribes L.: a threatened and endemic medicinal herb from the Turkish Eastern Anatolia region. Plant Cell, Tissue and Organ Culture (PCTOC), 162(1), Doi: 10.1007/s11240-025-03111-5

YÜCE MERVE,AYDIN MURAT,TURAN METİN,İLHAN EMRE,EKİNCİ MELEK,AĞAR GÜLERAY,YILDIRIM ERTAN (2025). Ameliorative effects of SL on tolerance to salt stress on pepper (Capsicum annuum L.) plants. Plant Physiology and Biochemistry, 223, Doi: 10.1016/j.plaphy.2025.109798

TÜRKOĞLU ARAS,HALİLOĞLU KAMİL,KASAPOĞLU AYŞE GÜL,DURULAR DAMLA,EREN BARIŞ,DEMİREL FATİH,IŞIK MUHAMMET İSLAM,HOLASOU HOSSEIN ABBASI,GÜNEŞ ADEM (2025). Impact of silver nanoparticles and silver nitrate on regeneration, biochemical traits, and nutrient composition of quinoa (Chenopodium quinoa willd.) in in vitro culture. Plant Cell, Tissue and Organ Culture (PCTOC), 162(82), Doi: 10.1007/s11240-025-03181-

UÇAR SÜMEYRA,YÜCE MERVE,YİĞİDER ESMA,AYDIN MURAT,TURAN METİN,EKİNCİ MELEK,İLHAN EMRE,KASAPOĞLU AYŞE GÜL,AKÇA MELİKE,ÖZTEMİZ FİRUZE,AĞAR GÜLERAY,YILDIRIM ERTAN (2025). Ameliorative effects of strigolactone on tolerance to lead stress on lettuce (Lactuca sativa L.) plants. Scientific Reports, 15, 38036, Doi: 10.1038/s41598-025-21

KARATAŞ RUFAYİ,KASAPOĞLU AYŞE GÜL,İLHAN EMRE,GÜLLAP MEHMET KERİM,AYDIN MURAT (2025). Genetic diversity analysis of lesser burnet (Sanguisorba minor Scop.) genotypes collected from Erzurum Province, Türkiye Using inter-simple sequence repeat (ISSR) markers. Genetic Resources and Crop Evolution, 72(5), 5365-5375., Doi: 10.1007/s10722-024-02263-

AYGÖREN AHMED SİDAR,UÇAR SÜMEYRA,YAPRAK ESRA,ÖNER BURAK MUHAMMED,ÇEPNİ EMİR,KASAPOĞLU AYŞE GÜL,BUTTANRI AZİZE,GÜNEŞ CEMİLE,GÜNEŞ ADEM,İLHAN EMRE,AYDIN MURAT (2026). ZnO and rGO-Based Nanoparticles Regulate Morphophysiological, Biochemical, and Molecular Responses of Phaseolus vulgaris L. Under Drought and Arsenic Stress. BMC PLANT BIOLOGY

ÖNER BURAK MUHAMMED,AYGÖREN AHMED SİDAR,KASAPOĞLU AYŞE GÜL,UÇAR SÜMEYRA,YAPRAK ESRA,MUSLU SELMAN,YİĞİDER ESMA,İLHAN EMRE,ÇİLTAŞ ABDULKADİR,AYDIN MURAT,YILDIRIM ERTAN (2026). Genome-wide analysis of Phaseolus vulgaris L. miR172 gene family members under heavy metal stress. BMC Genomics, 27(135), Doi: 10.1186/s12864-025-12474-0

UÇAR SÜMEYRA,MUSLU SELMAN,GÜNEŞ EBRU,KASAPOĞLU AYŞE GÜL,AYGÖREN AHMED SİDAR,YAPRAK ESRA,YİĞİDER ESMA,İLHAN EMRE,AYDIN MURAT,ÇİLTAŞ ABDULKADİR,YILDIRIM ERTAN (2026). Identification and Characterization of Common Bean OFP Gene Family Under Environmental Stresses. Plant Molecular Biology Reporter, 44(13), Doi: 10.1007/s11105-02501632-z

YAPRAK ESRA,UÇAR SÜMEYRA,ÖNER BURAK MUHAMMED,MUSLU SELMAN,KASAPOĞLU AYŞE GÜL,AYGÖREN AHMED SİDAR,İLHAN EMRE,HELLAÇ MELDA NUR,SİBİRLİOĞLU ILGIN ASENA,ÖTER TÜLAY,OCAK ELİF NUR (2026). Under heavy metal stress: genomic characterization and expression profiles of miRNA families in Phaseolus vulgaris. BMC Plant Biology, Doi: 10.1186/s12870-026-08805-2